Molecular response of poplar to single and combined ozone and drought.
Identifieur interne : 000832 ( Main/Exploration ); précédent : 000831; suivant : 000833Molecular response of poplar to single and combined ozone and drought.
Auteurs : Jin Zhang [États-Unis] ; Feng Gao [République populaire de Chine] ; Huixia Jia [République populaire de Chine] ; Jianjun Hu [République populaire de Chine] ; Zhaozhong Feng [République populaire de Chine]Source :
- The Science of the total environment [ 1879-1026 ] ; 2019.
Descripteurs français
- KwdFr :
- Ozone (effets indésirables), Populus (effets des médicaments et des substances chimiques), Populus (physiologie), Régulation de l'expression des gènes végétaux (effets des médicaments et des substances chimiques), Stomates de plante (effets des médicaments et des substances chimiques), Stomates de plante (physiologie), Sécheresses (MeSH), Transcriptome (effets des médicaments et des substances chimiques).
- MESH :
- effets des médicaments et des substances chimiques : Populus, Régulation de l'expression des gènes végétaux, Stomates de plante, Transcriptome.
- effets indésirables : Ozone.
- physiologie : Populus, Stomates de plante.
- Sécheresses.
English descriptors
- KwdEn :
- MESH :
- chemical , adverse effects : Ozone.
- drug effects : Gene Expression Regulation, Plant, Plant Stomata, Populus, Transcriptome.
- physiology : Plant Stomata, Populus.
- Droughts.
Abstract
High concentration in ground-level ozone (O3) and water deficit affect forest ecosystems service. Previously we found intercellular CO2 concentration and isoprene emission were affected by the combination of O3 and drought, but the molecular mechanisms controlling these phenotypes are still open questions. In this study, we investigated the stomatal conductance (gs) and transcriptome changes in an O3-sensitive hybrid poplar exposed to two O3 levels [charcoal-filtered ambient air (CF) and non-filtered ambient air plus 40 ppb (NF40)] and two water conditions [well-watered (W) and moderate drought (D)]. NF40 reduced the gs more under D than W. We identified the differentially expressed genes (DEGs) from pairwise comparisons and found the poplar's molecular response to drought was counteracted by elevated O3. From nine clusters obtained through K-means clustering, 12 core transcription factors were identified. DEGs involved in isoprene biosynthesis and phytohormones signal pathways indicate the molecular response and stomatal closure of poplar under O3 and/or drought might be through MEP/DOXP and ABA-dependent pathways. In addition, 102 Helitrons capturing DEGs were involved in response to O3 and/or drought and related with ABA-dependent pathway. This integrated analysis provides multi-dimensional insights to understand the molecular response to the combination of O3 and drought.
DOI: 10.1016/j.scitotenv.2018.11.195
PubMed: 30577128
Affiliations:
Links toward previous steps (curation, corpus...)
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Electronic address: fzz@rcees.ac.cn.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>State Key Laboratory of Urban and Regional Ecology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author></analytic><series><title level="j">The Science of the total environment</title><idno type="eISSN">1879-1026</idno><imprint><date when="2019" type="published">2019</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Droughts (MeSH)</term><term>Gene Expression Regulation, Plant (drug effects)</term><term>Ozone (adverse effects)</term><term>Plant Stomata (drug effects)</term><term>Plant Stomata (physiology)</term><term>Populus (drug effects)</term><term>Populus (physiology)</term><term>Transcriptome (drug effects)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>Ozone (effets indésirables)</term><term>Populus (effets des médicaments et des substances chimiques)</term><term>Populus (physiologie)</term><term>Régulation de l'expression des gènes végétaux (effets des médicaments et des substances chimiques)</term><term>Stomates de plante (effets des médicaments et des substances chimiques)</term><term>Stomates de plante (physiologie)</term><term>Sécheresses (MeSH)</term><term>Transcriptome (effets des médicaments et des substances chimiques)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="adverse effects" xml:lang="en"><term>Ozone</term></keywords><keywords scheme="MESH" qualifier="drug effects" xml:lang="en"><term>Gene Expression Regulation, Plant</term><term>Plant Stomata</term><term>Populus</term><term>Transcriptome</term></keywords><keywords scheme="MESH" qualifier="effets des médicaments et des substances chimiques" xml:lang="fr"><term>Populus</term><term>Régulation de l'expression des gènes végétaux</term><term>Stomates de plante</term><term>Transcriptome</term></keywords><keywords scheme="MESH" qualifier="effets indésirables" xml:lang="fr"><term>Ozone</term></keywords><keywords scheme="MESH" qualifier="physiologie" xml:lang="fr"><term>Populus</term><term>Stomates de plante</term></keywords><keywords scheme="MESH" qualifier="physiology" xml:lang="en"><term>Plant Stomata</term><term>Populus</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Droughts</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Sécheresses</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">High concentration in ground-level ozone (O<sub>3</sub>) and water deficit affect forest ecosystems service. Previously we found intercellular CO<sub>2</sub> concentration and isoprene emission were affected by the combination of O<sub>3</sub> and drought, but the molecular mechanisms controlling these phenotypes are still open questions. In this study, we investigated the stomatal conductance (g<sub>s</sub>) and transcriptome changes in an O<sub>3</sub>-sensitive hybrid poplar exposed to two O<sub>3</sub> levels [charcoal-filtered ambient air (CF) and non-filtered ambient air plus 40 ppb (NF40)] and two water conditions [well-watered (W) and moderate drought (D)]. NF40 reduced the g<sub>s</sub> more under D than W. We identified the differentially expressed genes (DEGs) from pairwise comparisons and found the poplar's molecular response to drought was counteracted by elevated O<sub>3</sub>. From nine clusters obtained through K-means clustering, 12 core transcription factors were identified. DEGs involved in isoprene biosynthesis and phytohormones signal pathways indicate the molecular response and stomatal closure of poplar under O<sub>3</sub> and/or drought might be through MEP/DOXP and ABA-dependent pathways. In addition, 102 Helitrons capturing DEGs were involved in response to O<sub>3</sub> and/or drought and related with ABA-dependent pathway. This integrated analysis provides multi-dimensional insights to understand the molecular response to the combination of O<sub>3</sub> and drought.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">30577128</PMID><DateCompleted><Year>2019</Year><Month>02</Month><Day>20</Day></DateCompleted><DateRevised><Year>2019</Year><Month>03</Month><Day>20</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1879-1026</ISSN><JournalIssue CitedMedium="Internet"><Volume>655</Volume><PubDate><Year>2019</Year><Month>Mar</Month><Day>10</Day></PubDate></JournalIssue><Title>The Science of the total environment</Title><ISOAbbreviation>Sci Total Environ</ISOAbbreviation></Journal><ArticleTitle>Molecular response of poplar to single and combined ozone and drought.</ArticleTitle><Pagination><MedlinePgn>1364-1375</MedlinePgn></Pagination><ELocationID EIdType="pii" ValidYN="Y">S0048-9697(18)34551-0</ELocationID><ELocationID EIdType="doi" ValidYN="Y">10.1016/j.scitotenv.2018.11.195</ELocationID><Abstract><AbstractText>High concentration in ground-level ozone (O<sub>3</sub>) and water deficit affect forest ecosystems service. Previously we found intercellular CO<sub>2</sub> concentration and isoprene emission were affected by the combination of O<sub>3</sub> and drought, but the molecular mechanisms controlling these phenotypes are still open questions. In this study, we investigated the stomatal conductance (g<sub>s</sub>) and transcriptome changes in an O<sub>3</sub>-sensitive hybrid poplar exposed to two O<sub>3</sub> levels [charcoal-filtered ambient air (CF) and non-filtered ambient air plus 40 ppb (NF40)] and two water conditions [well-watered (W) and moderate drought (D)]. NF40 reduced the g<sub>s</sub> more under D than W. We identified the differentially expressed genes (DEGs) from pairwise comparisons and found the poplar's molecular response to drought was counteracted by elevated O<sub>3</sub>. From nine clusters obtained through K-means clustering, 12 core transcription factors were identified. DEGs involved in isoprene biosynthesis and phytohormones signal pathways indicate the molecular response and stomatal closure of poplar under O<sub>3</sub> and/or drought might be through MEP/DOXP and ABA-dependent pathways. In addition, 102 Helitrons capturing DEGs were involved in response to O<sub>3</sub> and/or drought and related with ABA-dependent pathway. This integrated analysis provides multi-dimensional insights to understand the molecular response to the combination of O<sub>3</sub> and drought.</AbstractText><CopyrightInformation>Copyright © 2018 Elsevier B.V. All rights reserved.</CopyrightInformation></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Zhang</LastName><ForeName>Jin</ForeName><Initials>J</Initials><AffiliationInfo><Affiliation>State Key Laboratory of Urban and Regional Ecology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, China; State Key Laboratory of Tree Genetics and Breeding, Key Laboratory of Tree Breeding and Cultivation, State Forestry Administration, Research Institute of Forestry, Chinese Academy of Forestry, Beijing 100091, China; Bioscience Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Gao</LastName><ForeName>Feng</ForeName><Initials>F</Initials><AffiliationInfo><Affiliation>State Key Laboratory of Urban and Regional Ecology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Jia</LastName><ForeName>Huixia</ForeName><Initials>H</Initials><AffiliationInfo><Affiliation>State Key Laboratory of Tree Genetics and Breeding, Key Laboratory of Tree Breeding and Cultivation, State Forestry Administration, Research Institute of Forestry, Chinese Academy of Forestry, Beijing 100091, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Hu</LastName><ForeName>Jianjun</ForeName><Initials>J</Initials><AffiliationInfo><Affiliation>State Key Laboratory of Tree Genetics and Breeding, Key Laboratory of Tree Breeding and Cultivation, State Forestry Administration, Research Institute of Forestry, Chinese Academy of Forestry, Beijing 100091, China. Electronic address: hujj@caf.ac.cn.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Feng</LastName><ForeName>Zhaozhong</ForeName><Initials>Z</Initials><AffiliationInfo><Affiliation>State Key Laboratory of Urban and Regional Ecology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, China. Electronic address: fzz@rcees.ac.cn.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2018</Year><Month>11</Month><Day>15</Day></ArticleDate></Article><MedlineJournalInfo><Country>Netherlands</Country><MedlineTA>Sci Total Environ</MedlineTA><NlmUniqueID>0330500</NlmUniqueID><ISSNLinking>0048-9697</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>66H7ZZK23N</RegistryNumber><NameOfSubstance UI="D010126">Ozone</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D055864" MajorTopicYN="Y">Droughts</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D018506" MajorTopicYN="Y">Gene Expression Regulation, Plant</DescriptorName><QualifierName UI="Q000187" MajorTopicYN="N">drug effects</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D010126" MajorTopicYN="N">Ozone</DescriptorName><QualifierName UI="Q000009" MajorTopicYN="Y">adverse effects</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D054046" MajorTopicYN="N">Plant Stomata</DescriptorName><QualifierName UI="Q000187" MajorTopicYN="N">drug effects</QualifierName><QualifierName UI="Q000502" MajorTopicYN="Y">physiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D032107" MajorTopicYN="N">Populus</DescriptorName><QualifierName UI="Q000187" MajorTopicYN="Y">drug effects</QualifierName><QualifierName UI="Q000502" MajorTopicYN="N">physiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D059467" MajorTopicYN="Y">Transcriptome</DescriptorName><QualifierName UI="Q000187" MajorTopicYN="N">drug effects</QualifierName></MeshHeading></MeshHeadingList><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">Climate change</Keyword><Keyword MajorTopicYN="N">Drought</Keyword><Keyword MajorTopicYN="N">Ground-level ozone</Keyword><Keyword MajorTopicYN="N">Helitrons</Keyword><Keyword MajorTopicYN="N">Poplar</Keyword><Keyword MajorTopicYN="N">Protein-protein interaction (PPI) network</Keyword><Keyword MajorTopicYN="N">Transcriptome</Keyword></KeywordList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2018</Year><Month>09</Month><Day>27</Day></PubMedPubDate><PubMedPubDate PubStatus="revised"><Year>2018</Year><Month>11</Month><Day>12</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2018</Year><Month>11</Month><Day>13</Day></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2018</Year><Month>12</Month><Day>24</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2019</Year><Month>3</Month><Day>21</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2018</Year><Month>12</Month><Day>23</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">30577128</ArticleId><ArticleId IdType="pii">S0048-9697(18)34551-0</ArticleId><ArticleId IdType="doi">10.1016/j.scitotenv.2018.11.195</ArticleId></ArticleIdList></PubmedData></pubmed><affiliations><list><country><li>République populaire de Chine</li><li>États-Unis</li></country><region><li>Tennessee</li></region><settlement><li>Pékin</li></settlement></list><tree><country name="États-Unis"><region name="Tennessee"><name sortKey="Zhang, Jin" sort="Zhang, Jin" uniqKey="Zhang J" first="Jin" last="Zhang">Jin Zhang</name></region></country><country name="République populaire de Chine"><noRegion><name sortKey="Gao, Feng" sort="Gao, Feng" uniqKey="Gao F" first="Feng" last="Gao">Feng Gao</name></noRegion><name sortKey="Feng, Zhaozhong" sort="Feng, Zhaozhong" uniqKey="Feng Z" first="Zhaozhong" last="Feng">Zhaozhong Feng</name><name sortKey="Hu, Jianjun" sort="Hu, Jianjun" uniqKey="Hu J" first="Jianjun" last="Hu">Jianjun Hu</name><name sortKey="Jia, Huixia" sort="Jia, Huixia" uniqKey="Jia H" first="Huixia" last="Jia">Huixia Jia</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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